Published in Science Volume 297, Number 5586, Issue of 30 Aug 2002, pp. 1551-1555.
http://www.sciencemag.org/cgi/content/abstract/297/5586/1551

"Hierarchical Organization of Modularity in Metabolic Networks".

E. Ravasz 1, A. L. Somera 2, D. A. Mongru 2, Z. N. Oltvai 2* and A.-L. Barabási 1*

1 Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA.
2 Department of Pathology, Northwestern University, Chicago, IL 60611, USA.

*   To whom correspondence should be addressed.
E-mail:   zno008@northwestern.edu (Z.N.O.) and   alb@nd.edu (A.-L.B.)

WebSite "Self-Organized Networks":  http://www.nd.edu/~networks/cell/index.html



Abstract:

Spatially or chemically isolated functional modules composed of several cellular components and carrying discrete functions are considered fundamental building blocks of cellular organization, but their presence in highly integrated biochemical networks lacks quantitative support. Here, we show that the metabolic networks of 43 distinct organisms are organized into many small, highly connected topologic modules that combine in a hierarchical manner into larger, less cohesive units, with their number and degree of clustering following a power law. Within Escherichia coli, the uncovered hierarchical modularity closely overlaps with known metabolic functions. The identified network architecture may be generic to system-level cellular organization.

This article has been cited by other articles:

1. Goldberg, D. S., Roth, F. P. (2003). Assessing experimentally derived interactions in a small world. Proc. Natl. Acad. Sci. U. S. A. 100: 4372-4376. (  http://www.pnas.org/cgi/doi/10.1073/pnas.0735871100 ).

2. Rives, A. W., Galitski, T. (2003). Modular organization of cellular networks. Proc. Natl. Acad. Sci. U. S. A. 100: 1128-1133. (  http://www.pnas.org/cgi/doi/10.1073/pnas.0237338100. )

3. Wuchty, S. (2003). Small worlds in RNA structures. Nucleic Acids Res 31: 1108-1117.



Additional References:

1. Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, and Friedman N, "Module Networks: Identifying Regulatory Modules and Their Condition-Specific Regulators from Gene Expression Data".

2. Frenster JH, and Hovsepian JA, "RNA Feedback Mechanisms during Eykaryote Gene Regulation".

3. Hovsepian JA, and Frenster JH, "RNA-Induced Melting of DNA during Selective Gene Transcription", Mol. Biol. Cell, vol. 13, supp. p. 239a (November, 2002).

4. Saha S, Ansari AZ, Jarell KA, and Ptashne M, "RNA Sequences that Work as Transcriptional Activating Regions", Nucleic Acid Research, vol. 31, no. 5, pp. 1565-1570 (March 1, 2003).

4. Frenster JH,  "Ultrastructural Probes of Active DNA Sites, and the RNA Activators of DNA".
 



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