Reviews and:  "Ultrastructural Probes of Active DNA Sites, and the RNA Activators of DNA".

A Brief History of  Activator RNA:

RNA and Biological Causality:

Models of Embryonic Gene-Induced Initiation and Reversion of Adult Neoplasms:

554. Kumar MS, Erkeland SJ, Pester RE, Chen CY, Ebert MS, Sharp PA, and  Jacks T.,
"Suppression of non-small cell lung tumor development by the let-7 microRNA family".

553. Place RF, Li L-C, Pookot D, Noonan EJ, and Dahiya R, "MicroRNA-373 induces expression of genes with complementary promoter sequences".

552. Nunez E, Kwon YS, Hutt KR, Hu Q, Cardamone MD, Ohgi KA, Garcia-Bassets I, Rose DW, Glass CK, Rosenfeld MG, and Fu XD, "Nuclear receptor-enhanced transcription requires motor- and LSD1-dependent gene networking in interchromatin granules".

551. Borel C, Gagnebin M, Gehrig C, Kriventseva EV, Zdobnov EM, and Antonarakis SE,
"Mapping of Small RNAs in the Human ENCODE Regions".

550. Frenster JH, and Hovsepian JA, “Models of Embryonic Gene-Induced Initiation and Reversion of Adult Neoplasms”.

549. Zhu X, Ling J, Zhang L, Pi W, Wu M, and Tuan D, "A facilitated tracking and transcription mechanism of long-range enhancer function".

548. Steidl U, Steidl C, Ebralidze A, Chapuy B, Han H-J, Will B, Rosenbauer F, Becker A, Wagner K, Koschmieder S, Kobayashi S, Costa DB, Schulz T, O’Brien KB, Verhaak RGW, Delwel R, Haase D, Trümper L, Krauter J, Kohwi-Shigematsu T, Frank Griesinger F, and Tenen DG,
"A distal single nucleotide polymorphism alters long-range regulation of the PU.1 gene in acute myeloid leukemia".

547. Frenster JH, and Hovsepian JA, "DNase-I Ultrastructural Probe Sites and Kissing Chromosomes".

546. Han J, Kim D, and Morris KV, "Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells".

545. Attema JL, Papathanasiou P, Forsberg EC, Xu J, Smale ST, Weissman IL,
"Epigenetic characterization of hematopoietic stem cell differentiation using miniChIP and bisulfite sequencing analysis".

544. Xu J, Pope SD, Jazirehi AR, Attema JL, Papathanasiou P, Watts JA, Zaret KS, Weissman IL, and Smale ST, "Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells".

543. Hosen N, Park CY, Tatsumi N, Oji Y, Sugiyama H, Gramatzki M, Krensky AM, and Weissman IL,
"CD96 is a leukemic stem cell-specific marker in human acute myeloid leukemia".

542. Stubbs MC, and Armstrong SA, "Therapeutic Implications of Leukemia Stem Cell Development".

541. Palmer MB, Majumder P, Green MR, Wade PA, and Boss JM,
"A 3' Enhancer Controls Snail Expression in Melanoma Cells".

540. Frenster JH, and Hovsepian JA, "Embryonic Gene Re-expression May Initiate Adult Neoplasms".

539. Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PE, Hertel J,  Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, Helt G, Ganesh M, Ghosh S,  Piccolboni A, Sementchenko V, Tammana H, and Gingeras TR,
"RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription".

538. "Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project".   http://www.nature.com/nature/journal/v447/n7146/full/nature05874.html

537. Special Issue of Genome Research on the ENCODE pilot project findings, June, 2007.

536. Giger J, Qin AX, Bodell PW, Baldwin KM, and Haddad F,
"Activity of the beta-myosin heavy chain antisense promoter responds to diabetes and hypothyroidism".

535. Frenster JH, and Hovsepian JA,
"DNA-DNA Tetraplex Model of Paired Sense-Antisense RNA Synthesis".

534. Tufarelli C, "The silence RNA keeps: cis mechanisms of RNA mediated epigenetic silencing in mammals".

533. Shadley JD, Divakaran K, Munson K, Hines RN, Douglas K, and  McCarver DG,
"Identification and Functional Analysis of a Novel Human CYP2E1 Far Upstream Enhancer".

532. Huppert JL, and Balasubramanian S, "G-quadruplexes in promoters throughout the human genome".

531. Savoldo B, Rooney CM, Di Stasi A, Abken H, Hombach A, Foster AE, Zhang L, Heslop HE, Brenner MK, and Dotti G, "Epstein Barr virus-specific cytotoxic T lymphocytes expressing the anti-CD30{zeta} artificial chimeric T-cell receptor for immunotherapy of Hodgkin's disease".

530. Ponjavic J, Ponting CP, and Lunter G,
"Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs".

529. Mrázek J, Kreutmayer SB, Grässer FA, Polacek N, and Hüttenhofer A,  "Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells".

528. Prendergast JGD , Campbell H , Gilbert N , Dunlop MG , Bickmore WA,  and Semple CAM,
"Chromatin structure and evolution in the human genome".

527. Lee YS,  and Dutta A, "The tumor suppressor microRNA let-7 represses the HMGA2 oncogene".

526. Rossi JJ, "Transcriptional activation by small RNA duplexes".

525. Finocchiaro F, Carro MS, Francois S, Parise P, DiNinni V, and Muller H,
"Localizing hotspots of antisense transcription".

524. Mayr C, Hemann MT, and Bartel DP,
"Disrupting the Pairing Between let-7 and Hmga2 Enhances Oncogenic Transformation".

523. Hayes GD, and  Ruvkun G,  "Misexpression of the Caenorhabditis elegans miRNA let-7 is Sufficient to Drive Developmental Programs".

522. Lanctôt C, Cheutin T, Cremer M, Cavalli G, and Cremer T, "Dynamic genome architecture in the nuclear space:  regulation of gene expression in three dimensions".

521.  Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, and Suzuki H,
"Clusters of Internally Primed Transcripts Reveal Novel Long Noncoding RNAs".

520. Yanaihara N, Caplen N, Bowman E, Seike M, Kumamoto K, Yi M, Stephens RM, Okamoto A, Yokota J, Tanaka T, Calin GA, Liu C-G, Croce CM, and Harris CC,
"Unique microRNA molecular profiles in lung cancer diagnosis and prognosis".

519. Ooms M, Cupac D, Abbink TEM, Huthoff H, and Berkhout B, "The availability of the primer activation signal (PAS) affects the efficiency of HIV-1 reverse transcription initiation".

518. Sun X, Zhang Q,  and Al-Hashimi HM, "Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg²⁺ binding: role in the kissing–duplex structural transition".

517. Tokusumi Y, Ma Y, Song X, Jacobson RH, and Takada S, "A new core promoter element XCPE1 (X core promoter element 1) directs activator-, mediator-, and TBP-dependent but TFIID-independent RNA polymerase II transcription from TATA-less promoters".

516. Hwang H-W,  Wentze EA, and Mendell JT,
"A Hexanucleotide Element Directs MicroRNA Nuclear Import".

515. Navarro P , Page DR , Avner P, and Rougeulle C,  "Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program".

514. Giresi PG, Kim J, McDaniell RM, Iyer VR, and Lieb JD, "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin".

513. Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, and Rubin EM, "In vivo enhancer analysis of human conserved non-coding sequences".

512. Sijen T, Steiner FA, Thijssen KL, and Plasterk RHA,
"Secondary siRNAs Result from Unprimed RNA Synthesis and Form a Distinct Class".

511. Pak J, and Fire A,
"Distinct Populations of Primary and Secondary Effectors During RNAi in C. elegans".

510. Li L-C, Okino ST, Zhao H, Pookot D, Place RF, Urakami S, Enokida H, and Dahiya R,
"Small dsRNAs induce transcriptional activation in human cells".

509. Pollard KS, Salama SR, Lambert N, Lambot M-A, Coppens S, Pedersen JS, Katzman S, King B, Onodera C, Siepel A, Kern AD, Dehay C, Igel H, Ares M Jr, Vanderhaeghen P, and Haussler D,
"An RNA gene expressed during cortical development evolved rapidly in humans".

508. Simonis M, Klous P, Splinter E, Moshkin Y, Willemsen R, de Wit E, van Steensel B, and de Laat W,
"Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture–on-chip (4C)".

507. Cai S, Lee CC, and Kohwi-Shigematsu T, "SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes".

506. Li PTX, Bustamante C, and Tinoco, Jr I,
"Unusual mechanical stability of a minimal RNA kissing complex".

505. Trowbridge JJ, Moon RT, and Bhatia M,
"Hematopoietic stem cell biology: too much of a Wnt thing".

504. Pandorf CE, Haddad F, Roy RR, Qin AX, V. Edgerton R, and Baldwin KM, "Dynamics of myosin heavy chain gene regulation in slow skeletal muscle: Role of natural antisense RNA".

503. Ge X, Wu Q, Jung Y-C, Chen J, and Wang SM,
"A large quantity of novel human antisense transcripts detected by LongSAGE".

502. Bilodeau M, and Sauvageau G, "Uncovering stemness".

501. Listerman I, Sapra AK,  and Neugebauer KM,
"Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells".

500. Lomvardas S, Barnea G, Pisapia DJ, Mendelsohn M, Kirkland J, and Axel R,
"Interchromosomal Interactions and Olfactory Receptor Choice".

499. Binnie A, Castelo-Branco P, Monks J, and Proudfoot NJ,
"Homologous gene sequences mediate transcription-domain formation".

498. Christov CP, Gardiner TJ, Szüts D, and Krude T,
"Functional Requirement of Noncoding Y RNAs for Human Chromosomal DNA Replication".

497. Morgan RA, Dudley ME, Wunderlich JR, Hughes MS, Yang JC, Sherry RM, Royal RE, Topalian SL, Kammula US, Restifo NP, Zheng Z, Nahvi A, de Vries CR, Rogers-Freezer LJ, Mavroukakis SA, and Rosenberg SA.
"Cancer Regression in Patients After Transfer of Genetically Engineered Lymphocytes".

496. O’Gorman W, Kwek KY, Thomas B,  and Akoulitchev A,
"Non-coding RNA in transcription initiation".

495. Wu Q, Chen X, Zhang J, Loh Y-H, Low T-Y, Zhang W, Zhang W, Sze S-K, Lim B, and Ng H-H,
"Sall4 Interacts with Nanog and Co-occupies Nanog Genomic Sites in Embryonic Stem Cells",

494. Mollica LR, Crawley JTB, Liu K, Rance JB, Cockerill PN, Follows GA, Landry J-R, Wells DJ, and Lane DA, "Role of a 5'-enhancer in the transcriptional regulation of the human endothelial cell protein C receptor gene".

493. Hovsepian JA, and Frenster JH,
"Chromosome-Chromosome Contact Points and Paired Sense-Antisense RNA Synthesis".

492. Frenster JH, and Hovsepian JA, "Activator RNA Initiation of the DNA Transcription Bubble".

491. Richards M, Tan S-P, Chan W-K, and Bongso A,
"Reverse Serial Analysis of Gene Expression (SAGE) Characterization of Orphan SAGE Tags from Human Embryonic Stem Cells Identifies the Presence of Novel Transcripts and Antisense Transcription of Key Pluripotency Genes".

490. Green SJ, Lubrich D, and Turberfield AJ, "DNA hairpins: fuel for autonomous DNA devices".

489. Yanaihara N, Caplen N, Bowman E, Seike M, Kumamoto K, Yi M, Stephens RM, Okamoto A, Yokota J, Tanaka T, Calin GA, Liu C-G, Croce CM, and Harris CC,
"Unique microRNA molecular profiles in lung cancer diagnosis and prognosis".

488. Tian X-X, Zhang Y-G, Du J, Fang W-G, Ng H-K, and Zheng J,
"Effects of cotransfection of antisense-EGFR and wild-type PTEN cDNA on human glioblastoma cells".

487. Gallagher E, Mc Goldrick A, Chung WY, Mc Cormack O, Harrison M, Kerin M, Dervan PA, and Mc Cann A, "Gain of imprinting of SLC22A18 sense and antisense transcripts in human breast cancer".

486. Lee JC, Gutell RR, and Russell R, "The UAA/GAN Internal Loop Motif: A New RNA Structural Element that Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions".

485. Iwamoto M, and Higob K, "Accumulation of sense–antisense transcripts of the rice catalase gene CatB under dark conditions requires signals from shoots".

484. Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, and Zamore PD,
"A Distinct Small RNA Pathway Silences Selfish Genetic Elements in the Germline".

483. Sun M, Hurst LD, Carmichael GG, and Chen J,
"Evidence for variation in abundance of antisense transcripts between multicellular animals, but no relationship between antisense transcriptionand organismic complexity".

482. Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, and Collins FS,
"DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays".

481. Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, and Stamatoyannopoulos JA,
"Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays".

480. Goodrich JA, and Kugel JF, "Non-coding-RNA regulators of RNA polymerase II transcription".

479. Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen YD, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, and Collins FS, "Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)".

478. Swigon D, Coleman BD, and Olson WK, "Modeling the Lac repressor-operator assembly: The influence of DNA looping on Lac repressor conformation".

477. Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, DeCoste C, Schafer X, Lun Y, and Lemischka IR,
"Dissecting self-renewal in stem cells with RNA interference".

476. Gingeras TR, "The multitasking genome".

475. Frenster JH, and Hovsepian JA, "Kissing Chromosomes and Paired Sense-Antisense RNA Synthesis".

474. Faghihi MA, and Wahlestedt C, "RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals."

473. Newman SA, Forgacs G, and Müller GB, "Before programs: The physical origination of multicellular forms".

472. Barsyte-Lovejoy D, Lau SK, Boutros PC, Khosravi F, Jurisica I, Andrulis IL, Tsao MS, and Penn LZ,
"The c-Myc Oncogene Directly Induces the H19 Noncoding RNA by Allele-Specific Binding to Potentiate Tumorigenesis".

471. Branco MR, Pombo A, "Intermingling of Chromosome Territories in Interphase Suggests Role in Translocations and Transcription-Dependent Associations".

470. Ngo VN, R. Davis RE, Lamy L, Yu X, Zhao H, Lenz G, Lam LT, Dave S, Yang L, Powell J, and Staudt LM, "A loss-of-function RNA interference screen for molecular targets in cancer".

469. Wu S, Meng L, Wang S, Wang W, Xi L, Tian X, Chen G, Wu Y, Zhou J, Xu G, Lu Y, and Ma D,
"Reversal of the Malignant Phenotype of Cervical Cancer CaSki Cells through Adeno-Associated Virus–Mediated Delivery of HPV16 E7 Antisense RNA".

468. David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, and Steinmetz LM, "A high-resolution map of transcription in the yeast genome".

467. Diccianni MB, Calin GA, Ferracin M, Liu C-G, Negrini M, Croce CM, and Yu A,
"MicroRNA profiles of childhood T cell acute lymphoblastic leukemia".

466. Avigad S, Hameiri-Grossman M, Cohen IJ, Ash S, Weizman A, and Yaniv I,
"Frequent deletions of specific micro-RNAs in Ewing sarcoma".

465. Esquela-Kerscher A,  and Slack FJ, "Oncomirs — microRNAs with a role in cancer".

464. Mattick JS, "The Underworld of RNA", a book review of: The RNA World (3rd edition),  edited by Raymond F Gesteland, Thomas R Cech and  John F Atkins, Cold Spring Harbor Laboratory Press, 2006.

463. Krützfeldt J, Rajewsky N, Braich R, Rajeev KG, Tuschl T, Manoharan M, and Stoffel M,
"Silencing of microRNAs in vivo with 'antagomirs'".

462. Song X, Sun Y, and Garen A, "Roles of PSF protein and VL30 RNA in reversible gene regulation".

461. Frenster JH, and Hovsepian JA, "Ultrastructure of Euchromatin Contact Points between the Closed Loops of Adjacent Interphase Chromosomes".

460. Xu N, Tsai C-L, Lee JT,
"Transient Homologous Chromosome Pairing Marks the Onset of X Inactivation".

459. Bacher CP, Guggiari M, Brors B, Augui S, Clerc P, Avner P, Eils R, and Heard E,
"Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation".

458. Kamal M, Xie X, and Lander ES,
"A large family of ancient repeat elements in the human genome is under strong selection".

457. Lorch Y, Maier-Davis B, and Kornberg RD, "Chromatin remodeling by nucleosome disassembly in vitro".

456. Ng EWM, Shima DT, Calias P, Cunningham, ET Jr. , Guyer DR, and Adamis AP,
"Pegaptanib, a targeted anti-VEGF aptamer for ocular vascular disease".

455. Lipovich L, Vanisri RR, Kong SL, Lin C-Y, and Liu ET,
"Primate-Specific Endogenous Cis-Antisense Transcription in the Human 5q31 Protocadherin Gene Cluster".

454. Boeva V, Regnier M, Papatsenko D, and Makeev V, "Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression".

453. Majhail NS, Weisdorf DJ, Wagner JE, Defor TE, Brunstein CG, and Burns LJ,
"Comparable results of umbilical cord blood and HLA matched sibling donor hematopoietic stem cell transplant after reduced-intensity preparative regimen for advanced Hodgkin's lymphoma".

452. Janz M, Hummel M, Truss M, Wollert-Wulf B, Mathas S, Johrens K, Hagemeier C, Bommert K, Stein H, Dorken B, and Bargou RC, "Classical Hodgkin lymphoma is characterized by high constitutive expression of activating transcription factor 3 (ATF3) which promotes viability of Hodgkin/Reed-Sternberg cells".

451. Boiani M, and Schöler HR, "Regulatory  Networks  in  Embryo-Derived  Pluripotent  Stem  Cells".

450. Kay E, Dubuis C, and Haas D, "Three small RNAs jointly ensure secondary metabolism and biocontrol in Pseudomonas fluorescens CHA0".

449. Jones EA, and Flavell RA,
"Distal Enhancer Elements Transcribe Intergenic RNA in the IL-10 Family Gene Cluster".

448. Shin JT, Priest JR, Ovcharenko I, Ronco A, Moore RK, C. Burns CG, and MacRae CA,
"Human-zebrafish non-coding conserved elements act in vivo to regulate transcription".

447. Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJK, Cooke JE, and Elgar G,
"Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development".

446. Coudert AE, Pibouin L, Vi-Fane B, Thomas BL, Macdougall M, Choudhury A, Robert B, Sharpe PT, Berda A, and Lezot F, "Expression and regulation of the Msx1 natural antisense transcript during development".

445. Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y,  Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, and Wahlestedt C,
"Antisense Transcription in the Mammalian Transcriptome".

444. Sun M, Hurst LD, Carmichael GG, and Chen J, "Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts".

443. Chen J, Sun M, Kent WJ, Huang X, Xie H, Wang W, Zhou G, Shi RZ, and Rowley JD,
"Over 20% of human transcripts might form sense–antisense pairs".

442. Farh KK-H, Grimson A, Jan C, Lewis BP, Johnston WK, Lim LP, Burge CB, and Bartel DP,
"The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution".

441. Chen J, Sun M, Rowley JD, and Hurst LD,
"The small introns of antisense genes are better explained by selection for rapid transcription than by ‘genomic design’".

440. Cho DH, Thienes CP, Mahoney SE, Analau E, Filippova GN, and Tapscott SJ,
"Antisense Transcription and Heterochromatin at the DM1 CTG Repeats Are Constrained by CTCF".

439. Wu L,  and Belasco JG, "Micro-RNA Regulation of the Mammalian lin-28 Gene during Neuronal Differentiation of Embryonal Carcinoma Cells".

438. Chen C-Z, "MicroRNAs as Oncogenes and Tumor Suppressors".

437. Calin GA, Ferracin M, Cimmino A, Di Leva G, Shimizu M, Wojcik SE, Iorio MV, Visone R, Sever NI, Fabbri M, Iuliano R, Palumbo T, Pichiorri F, Roldo C, Garzon R, Sevignani C, Rassenti L, Alder H, Volinia S, Liu C-G, Kipps TJ, Negrini M, and Croce CM,
"A MicroRNA Signature Associated with Prognosis and Progression in Chronic Lymphocytic Leukemia".

436. Kuwabara T, Hsieh J, Nakashima K, Warashina M, Taira K, and Gage FH,
"The NRSE smRNA specifies the fate of adult hippocampal neural stem cells".

435. Yoo AS, and Greenwald I,
"LIN-12/Notch Activation Leads to MicroRNA-Mediated Down-Regulation of Vav in C. elegans".

434. Rodriguez-Martin T, Garcia-Blanco MA, Mansfield SG, Grover AC, Hutton M, Yu Q, Zhou J, Anderton BH, and Gallo J-M, "Reprogramming of tau alternative splicing by spliceosome-mediated RNA trans-splicing: Implications for tauopathies".

433. Andolfatto P, "Adaptive evolution of non-coding DNA in Drosophila".

432. Tiedge H, "RNA Reigns in Neurons".

431. Zapala MA, Hovatta I, Ellison JA, Wodicka L, Del Rio JA, Tennant R, Tynan W, Broide RS, Helton R, Stoveken BS, Winrow C, Lockhart DJ, Reilly JF, Young WG, Bloom FE, Lockhart DJ, and Barlow C,
"Adult mouse brain gene expression patterns bear an embryologic imprint".

430. Chen Q, Lin L, Smith S, Lin Q, and Zhou J, "Multiple Promoter Targeting Sequences exist in Abdominal-B to regulate long-range gene activation".

429. Yu X, Zhu X, Pi W, Ling J, Ko L, Takeda Y,  and Tuan D, "The LTR of ERV-9 human endogenous retrovirus binds to NF-Y in the assembly of an active LTR enhancer complex NF-Y/MZF1/GATA-2".

428. Bernstein E,  and Allis CD, "RNA meets chromatin".

427. Chambeyron S, Da Silva NR, Lawson KA, and Bickmore WA, "Nuclear re-organisation of the Hoxb complex during mouse embryonic development".

426. Halder K,  and Chowdhury S, "Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter".

425. Yafe A, Etzioni S, Weisman-Shomer P, and Fry M, "Formation and properties of hairpin and tetraplex structures of guanine-rich regulatory sequences of muscle-specific genes".

424. Ling J, Baibakov B, Pi W, Emerson BM, and Tuan D, "The HS2 Enhancer of the b-globin Locus Control Region Initiates Synthesis of Non-coding, Polyadenylated RNAs Independent of a cis-linked Globin Promoter".

423. Kapranov P, Drenkow  J, Cheng  J, Long J, Helt G, Dike S, and Gingeras TR, "Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays".

422. Eder M, and Scherr M, "MicroRNA and Lung Cancer".

421. Lee S, Bao J, Zhou G, Shapiro J, Xu J, Shi RZ, Lu X, Clark T, Johnson D, Kim YC, Wing C, Tseng C, Sun M, Lin W, Wang J, Yang H, Wang J, Du W, Wu C-I, Zhang X, and Wang SM, "Detecting novel low-abundant transcripts in Drosophila".

420. Navarro P, Pichard S, Ciaudo C, Avner P, and Rougeulle C, "Tsixtranscription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for X-chromosome inactivation".

419. Hovsepian JA, and Frenster JH, "Sense and Antisense during RNA Initiation of the DNA Transcription Bubble".

418. Conrad NK, and Steitz JA, "A Kaposi's sarcoma virus RNA element that increases the nuclear abundance of intronless transcripts".

417. Krek A, Grün D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, and Rajewsky N, "Combinatorial microRNA target predictions".

416. Blower MD, Nachury M, Heald R, and Weis K, "A Rae1-Containing Ribonucleoprotein Complex Is Required for Mitotic Spindle Assembly".

415. Sallacz NB,  and Jantsch MF,  "Chromosomal Storage of the RNA-editing Enzyme ADAR1 in Xenopus Oocytes".

414. Trotochaud AE,  and Wassarman KM, "A highly conserved 6S RNA structure is required for regulation of transcription".

413. Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, and Breaker RR, "6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter".

412. Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, Ghosh S, Bell I, Gerhard DS, and Gingeras TR, "Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution".

411. Lolle SJ, Victor JL, Young JM and  Pruitt RE, "Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis".

410. Kiyosawa H, Mis N, Iwase S, Hayashizaki Y,  and Abe K, "Disclosing hidden transcripts: Mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized".

409. Johnson SM, Grosshans H, Shingara J, Byrom M, Jarvis R, Cheng A, Labourier E, Reinert KL, Brown D, and Slack FJ, "RAS Is Regulated by the let-7 MicroRNA Family".

408. Grosshans H, Johnson T, Reinert KL, Gerstein M, and Slack FJ, "The Temporal Patterning MicroRNA let-7 Regulates Several Transcription Factors at the Larval to Adult Transition in C. elegans".

407. Zhang Z, and Burke JM, "Inhibition of Viral Replication by Ribozyme: Mutational Analysis of the Site and Mechanism of Antiviral Activity".

406. Dima RI, Hyeon C,  and Thirumalai D,
"Extracting Stacking Interaction Parameters for RNA from the Data Set of Native Structures".

405. Storz G, Altuvia S, and Wassarman KM, "An Abundance of RNA Regulators".

404. GE Healthcare and Science/AAAS Prizes for Young Scientists Awards.

403. Iwama H, and Gojobori T, "Highly Conserved Upstream Sequences for Transcription Factor Genes and Implications for the Regulatory Network", OPEN  ACCESS ARTICLE.

402. Relógio A, Ben-Dov C, Baum M, Ruggiu M, Gemund C, Benes V, Darnell RB, and Valcárcel J, "Alternative Splicing Microarrays Reveal Functional Expression of Neuron-specific Regulators in Hodgkin Lymphoma Cells".

401. Vakoc CR, Letting DL, Gheldof N, Sawado T, Bender MA, Groudine M, Weiss MJ, Dekker J, and  Blobel GA, "Proximity among Distant Regulatory Elements at the b-Globin Locus Requires GATA-1 and FOG-1".

400. Washietl S, Hofacker IL, and Stadler PF, "Fast and reliable prediction of noncoding RNAs".

399. Frenster JH, and Hovsepian JA, "Ultrastructure  of Closed Loops within Euchromatin of Isolated Lymphocyte Nuclei".

398. Ling J, Ainol L, Zhang L, Yu X, Pi W, and Tuan D, "HS2 Enhancer Function Is Blocked by a Transcriptional Terminator Inserted between the Enhancer and the Promoter".

397. Cai X, Hagedorn CH, and Cullen BR, "Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs".

396. Bracht J, Hunter S, Eachus R, Weeks P,  and Pasquinelli AE, "Trans-splicing and polyadenylation of let-7 microRNA primary transcripts".

395. Shachaf CM, Kopelman AM, Arvanitis C, Karlsson Å,  Beer S, Mandl S, Bachmann MH, Borowsky AD, Ruebner B, Cardiff RD, Yang Q, Bishop JM, Contag CH, and Felsher DW, "MYC inactivation uncovers pluripotent differentiation and tumour dormancy in hepatocellular cancer".

394. Mansfield JH, Harfe BD, Nissen R, Obenauer J, Srineel J, Chaudhuri A, Farzan-Kashani R, Zuker M, Pasquinelli AE, Ruvkun G, Sharp PA, Tabin CJ, and McManus MT, "MicroRNA-responsive 'sensor' transgenes uncover Hox-like and other developmentally regulated patterns of vertebrate microRNA expression".

393. Babak T, Zhang W, Morris Q, Blencowe BJ and Hughes TR, "Probing microRNAs with microarrays: Tissue specificity and functional inference".

392. Hovsepian JA, and Frenster JH, "Reprogramming as an Approach to Neoplasms".

391. Jiang M, Ma N, Vassylyev DG, and McAllister WT, "RNA Displacement and Resolution of the Transcription Bubble during Transcription by T7 RNA Polymerase".

390. Kornblihtt AR, de la Mata M, Fededa JP, Munoz MJ, and Nogues G, "Multiple links between transcription and splicing".

389. Buskirk AR, Landrigan A, and Liu DR, "Engineering a Ligand-Dependent RNA Transcriptional Activator".

388. Kuwabara T, Hsieh J, Nakashima K, Taira K, and Gage FH, "A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells".

387. Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, and Fraser P, "Active genes dynamically colocalize to shared sites of ongoing transcription".

386. Zink D, Amaral MD, Englmann A, Lang S, Clarke LA, Rudolph C, Alt F, Luther K, Braz C, Sadoni N, Rosenecker J, and Schindelhauer D, "Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei".

385. Gilbert N, Boyle S, Fiegler H, Woodfine K, Carter NP, and Bickmore WA, "Chromatin Architecture of the Human Genome: Gene-Rich Domains Are Enriched in Open Chromatin Fibers".

384. Schmitz J, Churakov G, Zischler H, and Brosius J, "A Novel Class of Mammalian-Specific Tailless Retropseudogenes".

383. Reilly KM, Tuskan RG, Christy E, Loisel DA, Ledger J, Bronson RT, Smith CD, Tsang S, Munroe DJ, and Jacks T, "Susceptibility to astrocytoma in mice mutant for Nf1 and Trp53 is linked to chromosome 11 and subject to epigenetic effects".

382. Frenster JH, and Hovsepian JA, "Ultrastructure  of Closed Loops within Euchromatin of Isolated Lymphocyte Nuclei".

381. O'Sullivan JM, Tan-Wong SM, Morillon A, Lee B, Coles J, Mellor J, and Proudfoot NJ, "Gene loops juxtapose promoters and terminators in yeast".

380. Kleckner N, Zickler D, Jones GH, Dekker J, Padmore R, Henle J,  and Hutchinson J, "A mechanical basis for chromosome function".

379. Allen TA, Von Kaenel S, Goodrich JA, and Kugel JF, "The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock".

378. Editorial: "Desperately seeking RNAs".

377. Kim DDY, Kim TTY, Walsh T, Kobayashi Y, Matise TC, Buyske S, and Gabriel A, "Widespread RNA Editing of Embedded Alu Elements in the Human Transcriptome".

376. Hochedlinger K, Blelloch R, Brennan C, Yamada Y, Kim M, Chin L, and Jaenisch R, "Reprogramming of a melanoma genome by nuclear transplantation".

375. Parada LA, McQueen PG,  and Misteli T, "Tissue-specific spatial organization of genomes".

374. Mallory AC, Dugas DV, Bartel DP, and Bartel B, "MicroRNA Regulation of NAC-Domain Targets Is Required for Proper Formation and Separation of Adjacent Embryonic, Vegetative, and Floral Organs".

373. Mathew S, Mascareno E,  and Siddiqui MAQ, "A Ternary Complex of Transcription Factors, Nishéd and NFATc4, and co-activator, p300, Bound to An Intronic Sequence, IRE, is Pivotal for the Up-regulation of Myosin Light Chain-2v Gene in Cardiac Hypertrophy".

372. Takamizawa J, Konishi H, Yanagisawa K, Tomida S, Osada H, Endoh H, Harano T, Yatabe Y, Nagino M, Nimura Y, Mitsudomi T, and Takahashi T, "Reduced Expression of the let-7 MicroRNAs in Human Lung Cancers in Association with Shortened Postoperative Survival".

371. Sawata M, Takeuchi H, and Kubo T, "Identification and analysis of the minimal promoter activity of a novel noncoding nuclear RNA gene, AncR-1, from the honeybee (Apis mellifera L.)".

370. Hong Y-K, Foreman K, Shin JW, Hirakawa S, Curry CL, Sage DR, Libermann T, Dezube BJ,  Fingeroth JD, and Detmar M, "Lymphatic reprogramming of blood vascular endothelium by Kaposi sarcoma–associated herpesvirus".

369. Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, and Chinnaiyan AM, "Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression".

368. Lev A, Noy R, Oved K, Novak H, Segal D, Walden P, Zehn D, and Reiter Y, "Tumor-specific Ab-mediated targeting of MHC-peptide complexes induces regression of human tumor xenografts in vivo".

367. Xie H , Ye M , Feng R , and Graf T, "Stepwise Reprogramming of B Cells into Macrophages".

366. Tanaka T, Tomaru Y, Nomura Y, Miura H, Suzuki M, and Hayashizaki Y, "Comprehensive search for HNF-1ß-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi".

365. Chambeyron S,  and Bickmore WA, "Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription".

364. Kanno T, M. Mette MF, Kreil DP, Aufsatz W, Matzke M, and Matzke AJM, "Involvement of Putative SNF2 Chromatin Remodeling Protein DRD1 in RNA-Directed DNA Methylation".

363. Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, and Haussler D, "Ultraconserved Elements in the Human Genome".

362. Katoh M, Shaw C, Xu Q, Van Driessche N, Morio T, Kuwayama H, Obara S, Urushihara H, Tanaka Y, and Shaulsky G, "An orderly retreat: Dedifferentiation is a regulated process".

361. Liao X, Li Y, Bonini C, Nair S, Gilboa E, Greenberg PD, and Yee C, "Transfection of RNA Encoding Tumor Antigens Following Maturation of Dendritic Cells Leads to Prolonged Presentation of Antigen and the Generation of High-Affinity Tumor-Reactive Cytotoxic T Lymphocytes".

360. Kreth G, Finsterle J, von Hase J, Cremer M, and Cremer C, "Radial Arrangement of Chromosome Territories in Human Cell Nuclei: A Computer Model Approach Based on Gene Density Indicates a Probabilistic Global Positioning Code".

359. Dutton A, O'Neil JD, Milner AE, Reynolds GM, Starczynski J, Crocker J, Young LS,  and Murray PG, "Expression of the cellular FLICE-inhibitory protein (c-FLIP) protects Hodgkin's lymphoma cells from autonomous Fas-mediated death".

358. Mathas S, Lietz A, Anagnostopoulos I, Hummel F, Wiesner B, Janz M, Jundt F, Hirsch B, Jöhrens-Leder K, Vornlocher H-P, Bommert K, Stein H, and Dörken B, "c-FLIP Mediates Resistance of Hodgkin/Reed-Sternberg Cells to Death Receptor–induced Apoptosis".

357. Su C-C, Chiu H-H, Chang C-C, Chen J-C, and Hsu S-M, "CD30 is Involved in Inhibition of T-Cell Proliferation by Hodgkin's Reed-Sternberg Cells".

356. Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, McArthur M, and Stamatoyannopoulos JA, "Genome-wide identification of DNase-I hypersensitive sites using active chromatin sequence libraries".

355. Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H and Gingeras TR, "Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22".

354. Frenster JH, and Hovsepian JA, "Activator RNA Exchange during Interphase Chromatin Reprogramming".

353. Choi CH, Kalosakas G, Rasmussen KO, Hiromura M, Bishop AR, and Usheva A, "DNA dynamically directs its own transcription initiation".

352. Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, Brubaker S, Tammana H, Helt G, Struhl K, and Gingeras TR, "Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs".

351. Murray PG, Qiu G-H, Fu L, Waites ER, Srivastava G, Heys D, Agathanggelou A, Latif F, Grundy RG, Mann JR, Starczynski J, Crocker J, Parkes SE, Ambinder RF, Young LS, and Tao Q, "Frequent epigenetic inactivation of the RASSF1A tumor suppressor gene in Hodgkin's lymphoma".

350. Li L, Connelly MC, Wetmore C, Curran T, and Morgan JI, "Mouse Embryos Cloned from Brain Tumors".

349. Dallosso AR, Hancock AL, Brown KW, Williams AC, Jackson S, and Malik K, "Genomic imprinting at the WT1 gene involves a novel coding transcript (AWT1) that shows deregulation in Wilms' tumours".

348. Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Heidelberg Fly Array Consortium (Hild M, Beckmann B, Haas S, Koch B, Vingron M, Sauer F, Hoheisel J, and Paro R), Paro R, Perrimon N, "Genome-Wide RNAi Analysis of Growth and Viability in Drosophila Cells".

347. Seitz H, Youngson N, Lin S-P, Dalbert S, Paulsen M, Bachellerie J-P, Ferguson-Smith AC, and Cavaille J, "Imprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like gene".

346. Sleutels F, Zwart R, and Barlow DP, "The non-coding Air RNA is required for silencing autosomal imprinted genes".

345. Sleutels F, Tjon G, Ludwig T, and Barlow DP, "Imprinted silencing of Slc22a2 and Slc22a3 does not need transcriptional overlap between Igf2r and Air".

344. Crawford GE, Holt IE, Mulliken JC, Tai D, Blakesly R, Bouffard G, Young A, Masiellot C, Green ED, Wolfsberg TG, and Collins FS, "Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites".

343. Sen G, Wehrman TS, Myers JW, and Blau HM, "Restriction enzyme-generated siRNA (REGS) vectors and libraries".

342. Han M-H, Goud S, Song L, and Fedoroff N, "TheArabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation".

341. Lai EC, Wiel C, and Rubin GM, "Complementary miRNA pairs suggest a regulatory role for miRNA:miRNA duplexes".

340. Cozzio A, Passegue E, Ayton PM, Karsunky H, Cleary ML, and Weissman IL, "Similar MLL-associated leukemias arising from self-renewing stem cells and short-lived progenitors".

339. Nikaido I, Saito C, Wakamoto A, Tomaru Y, Arakawa T, Hayashizaki Y, and Okazaki Y, "EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes".

338. Persengiev SP, Zhu X, and Green MR, "Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs)".

337. Herbert A, "The four Rs of RNA-directed evolution".

336. Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, and Ruvkun G, "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons".

335. Riley CA,  and Lehman N, "Generalized RNA-Directed Recombination of RNA".

334. Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, and Jacobsen SE, "Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation".

333. Dove AW, "Math models morphogenesis and mitosis".

332. Ciliberto A, Novak B, and Tyson J J, "Mathematical model of the morphogenesis checkpoint in budding yeast".

331. Hovsepian JA, and Frenster JH, "Bioassays of Isolated Nuclear RNA Species as Activators of DNA Transcription".

330. Hovsepian JA, and Frenster JH, "Euchromatin as an Extensile Force within Mammalian Cell Nuclei".

329. Davidson BL, "Hepatic Diseases --- Hitting the Target with Inhibitory RNAs".

328. Coughlin CM, Vance BA, Grupp SA, and Vonderheide RH, "RNA-transfected CD40-activated B cells induce functional T cell responses against viral and tumor antigen targets: implications for pediatric immunotherapy".

327. Kuras L, Borggrefe T, and Kornberg RD, "Association of the Mediator complex with enhancers of active genes".

326. Iwakiri D, Eizuru Y, Tokunaga M, and Takada K, "Autocrine Growth of Epstein-Barr Virus-Positive Gastric Carcinoma Cells Mediated by an Epstein-Barr Virus-Encoded Small RNA".

325. Santulli-Marotto S, Nair SK, Rusconi C, Sullenger B,  and Gilboa E, "Multivalent RNA Aptamers That Inhibit CTLA-4 and Enhance Tumor Immunity".

324. Hagan CR, Sheffield RF, and Rudin CM, "Human Alu element transposition induced by genotoxic stress".

323. Vinogradov AE, "Silent DNA: speaking RNA language?".

322. Pan B, Xiong Y, Shi K, and Sundaralingam M, "Crystal Structure of a Bulged RNA Tetraplex at 1.1 Å Resolution: Implications for a Novel Binding Site in RNA Tetraplex".

321. Dermitzakis ET, Reymond A, Scamuffa N, Ucla C, Kirkness E, Rossier C, and Antonarakis SE, "Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs)".

320. Vitali P, Royo H, Seitz H, Bachellerie J-P, Hüttenhofer A, and Cavaillé J, "Identification of 13 novel human modification guide RNAs".

319. Keightley PD, and Gaffney DJ, "Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents".

318. Dorsam ST, Ferrell CM, Dorsam GP, Derynck MK, Vijapurkar U, Khodabakhsh D, Pau B, Bernstein H, Haqq CM, Largman C, and Lawrence HJ, "The transcriptome of the leukemogenic homeoprotein HOXA9 in human hematopoietic cells".

317. Zhu Y, Tomlinson RL, Lukowiak AA, Terns RM, and Terns MP, "Telomerase RNA Accumulates in Cajal bodies in Human Cancer Cells".

316. Heidrich N, and Brantl S, "Antisense RNA mediated transcriptional attenuation: Importance of a U-turn loop structure in the target RNA of plasmid pIP501 for efficient inhibition by the antisense RNA".

315. Mangenot S, Leforestier A, Durand D, and Livolant F, "Phase Diagram of Nucleosome Core Partcles".

314. Chung W-H, Craighead JL, Chang W-H, Ezeokonkwo C, Bareket-Samish A, Kornberg RD, and Asturias FJ, "RNA Polymerase II/TFIIF Structure and Conserved Organization of the Initiation Complex".

313. Hershkovitz E, Tannenbaum E, Howerton SB, Sheth A, Tannenbaum A,  and Williams LD, "Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA".

312. Berman DM, Karhadkar SS, Maitra A, De Oca RM, Gerstenblith MR, Briggs K, Parker AR, Shimada Y, Eshleman JR, Watkins DN and Beachy PA, "Widespread Requirement for Hedgehog Ligand Stimulation in Growth of Digestive Tract Tumours".

311. Park W-S, Hayafune M, Miyano-Kurosaki N, and Takaku H, "Specific HIV-1 env gene silencing by small interfering RNAs in human peripheral blood mononuclear cells".

310. Deleault NR, Lucassen RW, and Supattapone S, "RNA Molecules Stimulate Prion Protein Conversion".

309. Skryabin BV, Sukonina V, Jordan U, Lewejohann L, Sachser N,  Muslimov I, Tiedge H, and Brosius J,
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308. McCarthy KM, McDevit D, Andreucci A, Reeves R, Nikolajczyk BS,"HMGA1 Co-Activates Transcription in B Cells through Indirect Association with DNA".

307. Mangan S, and Alon U, "Structure and Function of the Feed-Forward Loop Network Motif".

306. Stuart JM, Segal E, Koller D, and Kim SK, "A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules".

305. Brosius J, "How Significant is 98.5% 'Junk' in Mammalian Genome?"

304. Lanz RB, Chua SS, Barron N, Söder BM, DeMayo F, and O'Malley BW, "Steroid Receptor RNA Activator Stimulates Proliferation as Well as Apoptosis In Vivo".

303. Cantile M, Cindolo L, Napodano G, Altieri V, and Cillo C, "Hyperexpression of locus C genes in the HOX network is strongly associated in vivo with human bladder transitional cell carcinomas".

302. Knight J, "Gene Regulation: Switched on to RNA".

301. Gorisch SM, Richter K, Scheuermann MO, Herrmann H, and Lichter P, "Diffusion-limited compartmentalization of mammalian cell nuclei assessed by microinjected macromolecules".

300. Ji P, Diederichs S, Wang W, Böing S, Metzger R, Schneider PM, Tidow N, Brandt B, Buerger H, Bulk E, Thomas M, Berdel1 WE, Serve H and Müller-Tidow C, "MALAT-1, a novel noncoding RNA, and thymosin b4 predict metastasis and survival in early-stage non-small cell lung cancer".

299. Blume SW, Miller DM, Guarcello V, Shrestha K, Meng Z, Snyder RC, Grizzle WE, Ruppert JM, Gartland GL, Stockard CR, Jones DE, Jr, and Emanuel PD, "Inhibition of tumorigenicity by the 5'-untranslated RNA of the human c-myc P0 transcript".

298. Versteeg R, van Schaik BDC, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ and van Kampen AHC, "The Human Transcriptome Map Reveals Extremes in Gene Density, Intron Length, GC Content, and Repeat Pattern for Domains of Highly and Weakly Expressed Genes".

297. Hon LS, and Jain AN, "Compositional Structure of Repetitive Elements is Quantitatively Related to Co-expression of Gene Pairs".

296. Adler V, Zeiler B, Kryukov V, Kascsak R, Rubenstein R, and Grossman A, "Small, Highly Structured RNAs Participate in the Conversion of Human Recombinant PrP^Sen to PrP^Resin vitro".

295. Houbaviy HB, Murray MF, and Sharp PA, "Embryonic Stem Cell-Specific MicroRNAs".

294. Stuart JM, Segal E, Koller D, and Kim SK, "A Gene Coexpression Network for Global Discovery of Conserved Genetic Modules".

293. Ling J, Pi W, Yu X, Bengra C, Long Q, Jin H, Seyfang A, and Tuan D, "The ERV-9 LTR Enhancer is Not Blocked by the HS5 Insulator and Synthesizes Through the HS5 Site Non-Coding, Long RNAs that Regulate LTR Enhancer Function".

292. Byrne JA, Simonsson S, Western PS, and Gurdon JB, "Nuclei of Adult Mammalian Somatic Cells are Directly Reprogrammed to oct-4 Stem Cell Gene Expression by Amphibian Oocytes".

291. Frenster JH, and Hovsepian JA, "Overshoot in Late Telophase for RNA Re-Programming of Mitotic Chromatin".

290. Gottesfeld JM, and Barbas CF III, "RNA as a Transcriptional Activator".

289. Buskirk AR, Kehayova PD, Landrigan A, and Liu DR, "In Vivo Evolution of an RNA-Based Transcriptional Activator".

288. Boeger H, Griesenbeck J, Strattan JS, and Kornberg RD, "Nucleosomes Unfold Completely at a Transcriptionally Active Promoter".

287. Numata K, Kanai A, Saito R, Kondo S, Adachi J, Wilming LG, Hume DA, RIKEN GER Group, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, and Tomita M, "Identification of Putative Noncoding RNAs among the RIKEN Mouse Full-Length cDNA Collection".

286. Bono H, Yagi K, Kasukawa T, Nikaido I, Tominaga N, Miki R, Mizuno Y, Tomaru Y, Goto H, Nitanda H, Shimizu D, Makino H, Morita T, Fujiyama J, Sakai T, Shimoji T, Hume DA, RIKEN GER Group, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, and Okazaki Y, "Systematic Expression Profiling of the Mouse Transcriptome Using RIKEN cDNA Microarrays".

285. Carninci P, Waki K, Shiraki T, Konno H, Shibata K, Itoh M, Aizawa K, Arakawa T, Ishii Y, Sasaki D, Bono H, Kondo S, Sugahara Y, Saito R, Osato N, Fukuda S, Sato K, Watahiki A, Hirozane-Kishikawa T, Nakamura M, Shibata Y, Yasunishi Y, Kikuchi N, Yoshiki A, Kusakabe M, Gustincich S, Beisel K, Pavan W, Aidinis V, Nakagawara A, Held WA, Iwata H, Kono T, Nakauchi H, Lyons P, Wells C, Hume DA, Fagiolini M, Hensch TK, Brinkmeir M, Camper S, Hirota J, Mombaerts P, Muramatsu M, Okazaki Y, Kawai J, and Hayashizaki Y, "Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia".

284. Sudarsan N, Barrick JE, and Breaker RR, "Metabolite-Binding RNA Domains are Present in the Genes of Eukaryotes".

283. Volfovsky N, Haas BJ, and Salzberg SL, "Computational Discovery of Internal Micro-Exons".

282. Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, and Friedman N, "Module Networks: Identifying Regulatory Modules and Their Condition-Specific Regulators from Gene Expression Data".

281.   Nagy PL, Cleary ML, Brown PO, and Lieb JD, "Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin".

280. Percipalle P, Fomproix N, Kylberg K, Miralles F, Bjorkroth B, Daneholt B, and Visa N, "An Actin-Ribonucleoprotein Interaction is Involved in Transcription by RNA Polymerase II".

279. Yuan G, Klämbt C, Bachellerie J-P, Brosius J and Hüttenhofer A, "RNomics in Drosophila melanogaster: Identification of 66 Candidates for Novel Non-messenger RNAs".

278. Saha S, Ansari AZ, Jarell KA, and Ptashne M, "RNA Sequences that Work as Transcriptional Activating Regions".

277. Lee JM, and Sonnhammer ELL, "Genomic Gene Clustering Analysis of Pathways in Eukaryotes".

276. Sandmeyer S, "Integration by Design".

275. Lai EC, "RNA Sensors and Riboswitches: Self-Regulating Messages".

274. Angermayr M, and Bandlow W, "Permanent Nucleosome Exclusion from the Gal4p-Inducible Yeast GCY1 Promoter".

273. Prasanth KV, Sacco-Bubulya PA, Prasanth SG, and Spector DL, "Sequential Entry of Components of Gene Expression Machinery into Daughter Nuclei".

272. Trinklein ND, Aldred SJF, Saldanha AJ, and Myers RM, "Identification and Functional Analysis of Human Transcriptional Promoters".

271. Bartl S, Ban J, Weninger H, Jug G, and Kovar H, "A Small Nuclear RNA, hdm365, is the Major Processing Product of the Human mdm2 Gene".

270. Ramaswamy S, Ross KN, Lander ES, and Golub TR, "A Molecular Signature of Metastasis in Primary Solid Tumors".

269. Akashi K, He X, Chen C, Iwasaki H, Niu C, Steenhard B, Zhang J, Haug J, and Li L, "Transcriptional Accessibility for Genes of Multiple Tissues and Hematopoietic Lineages is Hierarchically Controlled during Early Hematopoiesis".

268. Hovsepian JA, and Frenster JH, "RNA-Induced Melting of DNA during Selective Gene Transcription".

267. Lanz RB, Razani B, Goldberg AD, and O'Malley BW, "Distinct RNA Motifs are Important for Coactivation of Steroid Hormone Receptors by Steroid Receptor RNA Activator (SRA)".

266. Kwek KY, Murphy S, Furger A, Thomas B, O'Gorman W, Kimura H, Proudfoot NJ, and Akoulitchev A, "U1 snRNA Associates with TFIIH and Regulates Transcriptional Initiation".

265. Arbeitman MN, Furlong EEM, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, and White KP, "Gene Expression During the Life Cycle of Drosophila melanogaster".

264. Pollack JR, Sorlie T, Perou CM, Rees CA, Jeffrey SS, Lonning PE, Tibshirani R, Botstein D, Borresen-Dale A-L, and Brown PO, "Microarray Analysis Reveals a Major Direct Role of DNA Copy Number Alteration in the Transcriptional Program of Human Breast Tumors".

263. Frenster JH, and Hovsepian JA, "RNA Feedback Mechanisms during Eukaryotic Gene Regulation".

262. Grundy FJ, Winkler WC, and Henkin TM, "tRNA-Mediated Transcription Antitermination in vitro: Codon-Anticodon Pairing Independent of the Ribosome".

261. Brummelkamp TR, Bernards R, and Agami R, "Stable Suppression of Tumorigenicity by Virus-Mediated RNA Interference".

260. Manz MG, Miaymoto T, Akashi K, and Weissman IL, "Prospective Isolation of Human Clonogenic Common Myeloid Progenitors".

259. Diehn M, Alizadeh AA, Rando OJ, Liu CL, Stankunas K, Botstein D, Crabtree GR, and Brown PO, "Genomic Expression Programs and the Integration of the CD28 Costimulatory Signal in T Cell Activation".

258. Johnson KD, Grass JA, Boyer ME, Kiekhaefer CM, Blobel GA, Weiss MJ, Bresnick EH, "Cooperative Activities of Hematopoietic Regulators Recruit RNA Polymerase II to a Tissue-Specific Chromatin Domain".

257. Schroder ARW, Shinn P, Chen H, Berry C, Ecker JR, and Bushman F, "HIV-1 Integration in the Human Genome Favors Active Genes and Local Hotspots".

256. Madamanchi NR, Hu ZY, Li F, Horaist C, Moon S-K, Patterson C, and Runge MS, "A Noncoding RNA Regulates Human Protease-Activated Receptor-1 Gene during Embryogenesis".

255. Gallie DR, "The 5'-Leader of Tobacco Mosaic Virus Promotes Translation through Enhanced Recruitment of eIF4F".

254. Luo Y, Kurz J, MacAfee N, and Krause MO, "C-myc Deregulation during Transformation Induction: Involvement of 7SK RNA".

253. Kobayashi A, Akasaka K, Kawaichi M, and Kokubo T, "Functional Interaction between TATA and Upstream CACGTG Elements Regulates the Temporally Specific Expression of Otx mRNAs during Early Embryogenesis of the Sea Urchin, Hemicentrotus pulcherrimus".

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